SRX155530
GSM950852: EmptyVector WCE ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
UKE-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
UKE-1
cell type
Leukemia cell line
cell line
UKE-1
variation
EmptyVector
antibody
none (WCE)

Sequenced DNA Library

library_name
GSM950852: EmptyVector_WCE_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40305922
Reads aligned (%)
94.6
Duplicates removed (%)
2.9
Number of peaks
1064 (qval < 1E-05)

hg19

Number of total reads
40305922
Reads aligned (%)
93.7
Duplicates removed (%)
4.2
Number of peaks
1152 (qval < 1E-05)

Base call quality data from DBCLS SRA