SRX155380
GSM950322: Tot2, MSCV, Day3, anti-H3K4me1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
Tot2
NA
NA

Attributes by original data submitter

Sample

source_name
Tot2 cells, MSCV transuced, Day3
cell line
Myeloid progenitor cell line Tot2 (derived from Irf8 knockout mouse)
culture condition
MSCV transduced
treatment period
3 days
chip antibody
rabbit anti-H3K4me1 antibody (Ab8895, Abcam)

Sequenced DNA Library

library_name
GSM950322: Tot2, MSCV, Day3, anti-H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46028798
Reads aligned (%)
80.6
Duplicates removed (%)
20.8
Number of peaks
28142 (qval < 1E-05)

mm9

Number of total reads
46028798
Reads aligned (%)
80.5
Duplicates removed (%)
20.9
Number of peaks
28040 (qval < 1E-05)

Base call quality data from DBCLS SRA