SRX155379
GSM950321: Tot2, MSCV, Day3, input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Tot2
NA
NA

Attributes by original data submitter

Sample

source_name
Tot2 cells, MSCV transuced, Day3
cell line
Myeloid progenitor cell line Tot2 (derived from Irf8 knockout mouse)
culture condition
MSCV transduced
treatment period
3 days
chip antibody
none

Sequenced DNA Library

library_name
GSM950321: Tot2, MSCV, Day3, input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
53290723
Reads aligned (%)
87.3
Duplicates removed (%)
23.3
Number of peaks
561 (qval < 1E-05)

mm9

Number of total reads
53290723
Reads aligned (%)
87.1
Duplicates removed (%)
23.3
Number of peaks
690 (qval < 1E-05)

Base call quality data from DBCLS SRA