SRX154992
GSM949575: SUM159PT H3K27me3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Breast
Cell type
SUM 159PT
Primary Tissue
Breast
Tissue Diagnosis
Anaplastic Carcinoma

Attributes by original data submitter

Sample

source_name
Breast cancer cells
cell line
SUM159PT
cell type
Basal-like cells
chip antibody
H3K27me3
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM949575: SUM159PT_H3K27me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11129973
Reads aligned (%)
67.3
Duplicates removed (%)
6.6
Number of peaks
117 (qval < 1E-05)

hg19

Number of total reads
11129973
Reads aligned (%)
67.1
Duplicates removed (%)
6.8
Number of peaks
138 (qval < 1E-05)

Base call quality data from DBCLS SRA