SRX154499
GSM947528: LNCaP Cells CTCF ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell line
LNCaP
chip antibody
CTCF
chip antibody manufacturer
Millipore

Sequenced DNA Library

library_name
GSM947528: LNCaP Cells CTCF ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22620367
Reads aligned (%)
96.7
Duplicates removed (%)
11.1
Number of peaks
33450 (qval < 1E-05)

hg19

Number of total reads
22620367
Reads aligned (%)
96.0
Duplicates removed (%)
12.5
Number of peaks
33312 (qval < 1E-05)

Base call quality data from DBCLS SRA