Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Sarcoma iPSCs #3-derived MEF
cell type
sarcoma MEF

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. We used anti HA antibody(Monoclonal Mouse IgG 1-κ):nacalai cat# 06340-54 Lot#M4H0340 . Libraries were prepared according to illumina'sTrueseq ChIP sample prep kit set A(Part#IP-202-1012)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
27393111
Reads aligned (%)
95.5
Duplicates removed (%)
16.6
Number of peaks
26563 (qval < 1E-05)

mm9

Number of total reads
27393111
Reads aligned (%)
95.4
Duplicates removed (%)
16.7
Number of peaks
26513 (qval < 1E-05)

Base call quality data from DBCLS SRA