SRX15337400
GSM6167095: YL-NBS1-CTCF-R8; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Blood
Cell type
HAP1
NA
NA

Attributes by original data submitter

Sample

source_name
HAP1-RAD21-TEV cells
protocol
Hi-C 2.0
enzyme
DpnII
cell line
HAP1-RAD21-TEV cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were purified using hytonic buffer and after treatments, nuclei were fixed for Hi-C protocol ChIPseq (PMID31522987)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34649368
Reads aligned (%)
77.7
Duplicates removed (%)
34.6
Number of peaks
21678 (qval < 1E-05)

hg19

Number of total reads
34649368
Reads aligned (%)
77.0
Duplicates removed (%)
35.1
Number of peaks
21448 (qval < 1E-05)

Base call quality data from DBCLS SRA