SRX153075
GSM945566: HistoneH3 mouse DP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
DP T-cells
tissue
Thymus
passages
N.A.
strain
C57BL/6
cell type
Double Positive Thymocytes
antibody
HistoneH3

Sequenced DNA Library

library_name
GSM945566: HistoneH3 mouse DP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
50638351
Reads aligned (%)
87.9
Duplicates removed (%)
41.7
Number of peaks
728 (qval < 1E-05)

mm9

Number of total reads
50638351
Reads aligned (%)
87.7
Duplicates removed (%)
41.7
Number of peaks
830 (qval < 1E-05)

Base call quality data from DBCLS SRA