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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: TE7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1530371
GSM2039110: TE7 H3K27Ac; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Digestive tract
Cell type
TE7
Primary Tissue
Esophagus
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
TE7
cell line
TE7
cell type
Esophageal squamous cell carcinoma (ESCC)
chip antibody
H3K27Ac
chip antibody vendor
AbCam
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. DNA fragments were end-pair repaired foloowed by adapter ligation. Later these fragments were PCR-amplified and size selected (100-300 bp).
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
64273075
Reads aligned (%)
98.8
Duplicates removed (%)
3.7
Number of peaks
12409 (qval < 1E-05)
hg19
Number of total reads
64273075
Reads aligned (%)
98.0
Duplicates removed (%)
5.5
Number of peaks
11958 (qval < 1E-05)
Base call quality data from
DBCLS SRA