SRX1529435
GSM2038351: H3K27me3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
Neuroblastoma
cell line
neuroblastoma cell line SK-N-SH
chip antibody
H3K27me3 (Millipore, catalog# 17-622)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and CTCF,Rad21,RNAPII, histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12004909
Reads aligned (%)
99.3
Duplicates removed (%)
2.7
Number of peaks
145 (qval < 1E-05)

hg19

Number of total reads
12004909
Reads aligned (%)
98.6
Duplicates removed (%)
3.4
Number of peaks
197 (qval < 1E-05)

Base call quality data from DBCLS SRA