SRX152826
GSM946488: H3K27me3 UM-SCC-4; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Others
Cell type
SCC-4
Primary Tissue
Tongue
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
UM-SCC-4 cell line
hpv-status
HPV-negative
age
47
Sex
female
tumor site
Base of tongue
antibody
H3K27me3
antibody vendor
Millipore cat# 07-449, lot# JBC1854858, Rab pAb

Sequenced DNA Library

library_name
GSM946488: H3K27me3_UM-SCC-4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
96840383
Reads aligned (%)
96.2
Duplicates removed (%)
46.6
Number of peaks
1312 (qval < 1E-05)

hg19

Number of total reads
96840383
Reads aligned (%)
95.8
Duplicates removed (%)
47.7
Number of peaks
1282 (qval < 1E-05)

Base call quality data from DBCLS SRA