Antigen

Antigen Class

TFs and others

Antigen

FOXA1

Cell type

Cell type Class

Lung

Cell type

NCI-H441

Primary Tissue

Lung

Tissue Diagnosis

Adenocarcinoma Papillary

Sample

source_name

NCI-H441

cell line

NCI-H441

cell type

Human papillary lung adenocarcinoma

chip antibody

FOXA1 (CST, #53528)

treatment

Vehicle, 30 mins.

Sequenced DNA Library

library_name

GSM6152849

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cells were fixed and extracts prepared according to the manufacturer's protocol (SimpleChIP Enzymatic Chromatin IP Kit, CST, #9005) ChIP-seq libraries were prepared by Genewiz (Azenta)

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

24448347

Reads aligned (%)

89.1

Duplicates removed (%)

35.8

Number of peaks

403 (qval < 1E-05)

hg19

Number of total reads

24448347

Reads aligned (%)

88.5

Duplicates removed (%)

36.2

Number of peaks

197 (qval < 1E-05)