Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary

Attributes by original data submitter

Sample

source_name
NCI-H441
cell line
NCI-H441
cell type
Human papillary lung adenocarcinoma
chip antibody
GR (CST, #12041)
treatment
Vehicle, 30 mins.

Sequenced DNA Library

library_name
GSM6152845
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed and extracts prepared according to the manufacturer's protocol (SimpleChIP Enzymatic Chromatin IP Kit, CST, #9005) ChIP-seq libraries were prepared by Genewiz (Azenta)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
29023560
Reads aligned (%)
93.0
Duplicates removed (%)
14.9
Number of peaks
598 (qval < 1E-05)

hg19

Number of total reads
29023560
Reads aligned (%)
92.1
Duplicates removed (%)
15.2
Number of peaks
237 (qval < 1E-05)

Base call quality data from DBCLS SRA