Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary

Attributes by original data submitter

Sample

source_name
NCI-H441
cell line
NCI-H441
cell type
Human papillary lung adenocarcinoma
chip antibody
GR (CST, #12041)
treatment
100nM dexamethasone treatment, 30 mins.

Sequenced DNA Library

library_name
GSM6152843
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed and extracts prepared according to the manufacturer's protocol (SimpleChIP Enzymatic Chromatin IP Kit, CST, #9005) ChIP-seq libraries were prepared by Genewiz (Azenta)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
25041089
Reads aligned (%)
93.4
Duplicates removed (%)
14.5
Number of peaks
907 (qval < 1E-05)

hg19

Number of total reads
25041089
Reads aligned (%)
92.7
Duplicates removed (%)
14.8
Number of peaks
606 (qval < 1E-05)

Base call quality data from DBCLS SRA