SRX1526580
ChIP-Seq of human prostate cell line LNCaP: anti-NFIB antibody

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

isolate
not applicable
age
missing
biomaterial_provider
not available
sex
male
tissue
prostate
cell_line
LNCAP
treatment
NFIB_rep_2

Sequenced DNA Library

library_name
SL58765_0
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38412164
Reads aligned (%)
97.0
Duplicates removed (%)
10.6
Number of peaks
1668 (qval < 1E-05)

hg19

Number of total reads
38412164
Reads aligned (%)
96.0
Duplicates removed (%)
11.7
Number of peaks
909 (qval < 1E-05)

Base call quality data from DBCLS SRA