SRX152134
GSM945905: E14 d4 5-hmC ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells (E14)
development stage
Day 4
cell type
mouse embryonic stem cells (E14)
treatment
activin
genetic background
129P2

Sequenced DNA Library

library_name
GSM945905: E14 d4 5-hmC ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
52978687
Reads aligned (%)
98.6
Duplicates removed (%)
9.8
Number of peaks
109931 (qval < 1E-05)

mm9

Number of total reads
52978687
Reads aligned (%)
98.5
Duplicates removed (%)
9.8
Number of peaks
109874 (qval < 1E-05)

Base call quality data from DBCLS SRA