Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Pancreas

Cell type

PANC-1

Tissue

Pancreas/Duct

Disease

Epithelioid Carcinoma

Sample

source_name

PANC-1

biomaterial_provider

ATCC

lab

USC

lab description

Farnham - University of Southern California

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

PANC-1

cell organism

human

cell description

pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

antibody

H3K4me3B

antibody antibodydescription

Rabbit monoclonal antibody. Antibody Target: H3K4me3

antibody targetdescription

Histone H3 (tri-methyl K4) marks promoters in chromatin regions

antibody vendorname

Cell Signaling

antibody vendorid

9751S

control

UCDavis

control description

Input library was prepared at UC Davis.

control

UCDavis

control description

Input library was prepared at UC Davis.

controlid

wgEncodeEH002070

replicate

1

Sequenced DNA Library

library_name

GSM945856: USC_ChipSeq_PANC-1_H3K4me3B_UCDavis

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

53620150

Reads aligned (%)

97.7

Duplicates removed (%)

34.5

Number of peaks

29749 (qval < 1E-05)

hg19

Number of total reads

53620150

Reads aligned (%)

97.5

Duplicates removed (%)

34.9

Number of peaks

29597 (qval < 1E-05)