SRX15206428
GSM6122827: MTD-Gal4 driven control KD Rhi-ChIP biological replicate 2; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
rhi

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
ovary
tissue
ovary
genotype
w, MTD/+; MTD/+; MTD/pW20>w_sh[attP2]/;
antibody
anti-Rhi antibody (Rhino#1_3573gly)

Sequenced DNA Library

library_name
GSM6122827
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation (ChIP) was carried out according to Lee et al. (2006) ChIP-seq libraries were prepared using the NEB Next Ultra II DNA Library for Illumina (NEB).

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
17678586
Reads aligned (%)
77.0
Duplicates removed (%)
43.8
Number of peaks
4460 (qval < 1E-05)

dm3

Number of total reads
17678586
Reads aligned (%)
77.2
Duplicates removed (%)
40.8
Number of peaks
7438 (qval < 1E-05)

Base call quality data from DBCLS SRA