SRX15203287
GSM6122606: A549, p53-SC; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549
cell line
A549
chip antibody
Anti-p53 antibody, sc-126, Santa Cruz
genotype
Wild-type
treatment
None

Sequenced DNA Library

library_name
GSM6122606
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA were purified from chromatin IP products. Libraries were prepared using Illumina's TruSeq ChIP library Preparation Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33966201
Reads aligned (%)
39.5
Duplicates removed (%)
70.4
Number of peaks
169 (qval < 1E-05)

hg19

Number of total reads
33966201
Reads aligned (%)
39.1
Duplicates removed (%)
71.0
Number of peaks
150 (qval < 1E-05)

Base call quality data from DBCLS SRA