Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Blood

Cell type

Thymocytes

MeSH Description

HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Sample

source_name

Total thymocytes, WT, H3K9me3 ChIP

strain/background

C57BL/6 / sv129sv

genotype

wild type

cell type

T cell progenitors

chip antibody

H3K9me3

antibody vendor

Diagenode

Sequenced DNA Library

library_name

GSM945744: H3K9me3_WT_ChIPSeq

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

49545857

Reads aligned (%)

96.0

Duplicates removed (%)

69.0

Number of peaks

444 (qval < 1E-05)

mm9

Number of total reads

49545857

Reads aligned (%)

95.8

Duplicates removed (%)

69.1

Number of peaks

517 (qval < 1E-05)