SRX1518233
GSM2027877: GFP Smad2 ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
neuroepithelia cells
cell type
ES-derived neural neuroepithelia cells
passages
15-18
strain
D3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin were sheared to fragements by using sonication,then protein-DNA complexes were isolated with antibody GFP. Libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
51992229
Reads aligned (%)
89.7
Duplicates removed (%)
16.3
Number of peaks
1476 (qval < 1E-05)

mm9

Number of total reads
51992229
Reads aligned (%)
89.5
Duplicates removed (%)
16.3
Number of peaks
1529 (qval < 1E-05)

Base call quality data from DBCLS SRA