SRX151389
GSM942112: Chip Seq H3K4me3 in ER:Ras expressing IMR90 with no treatment SLX3162; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 Human Diploid Fibroblasts
chip antibody manufacturer
Wako
treatment
no treatment
transgene
ER:Ras
gender
female
cell line
IMR90
chip antibody
H3K4me3 CMA304

Sequenced DNA Library

library_name
GSM942112: Chip Seq H3K4me3 in ER:Ras expressing IMR90 with no treatment SLX3162
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31543455
Reads aligned (%)
90.0
Duplicates removed (%)
45.4
Number of peaks
16748 (qval < 1E-05)

hg19

Number of total reads
31543455
Reads aligned (%)
89.5
Duplicates removed (%)
46.4
Number of peaks
16854 (qval < 1E-05)

Base call quality data from DBCLS SRA