SRX151362
GSM942085: Chip Seq H3K9me2 in ER:Ras expressing IMR90 d6 4OHT SLX3209; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 Human Diploid Fibroblasts
treatment
d6 4OHT
transgene
ER:Ras
gender
female
cell line
IMR90
chip antibody
H3K4me3 CMA317

Sequenced DNA Library

library_name
GSM942085: Chip Seq H3K9me2 in ER:Ras expressing IMR90 d6 4OHT SLX3209
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
67635290
Reads aligned (%)
98.6
Duplicates removed (%)
10.3
Number of peaks
2017 (qval < 1E-05)

hg19

Number of total reads
67635290
Reads aligned (%)
97.9
Duplicates removed (%)
11.1
Number of peaks
1806 (qval < 1E-05)

Base call quality data from DBCLS SRA