SRX151246
GSM941711: SMC1 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMC1A

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
BCBL1 pleural effusion lymphoma, SMC1 ChIP
cell line
BCBL1
cell type
KSHV-infected pleural effusion lymphoma cells
chip antibody
rabbit anti-SMC1
antibody vendor
Bethyl

Sequenced DNA Library

library_name
GSM941711: SMC1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27236990
Reads aligned (%)
97.5
Duplicates removed (%)
16.9
Number of peaks
36482 (qval < 1E-05)

hg19

Number of total reads
27236990
Reads aligned (%)
97.2
Duplicates removed (%)
17.5
Number of peaks
36350 (qval < 1E-05)

Base call quality data from DBCLS SRA