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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: AFF1
wikigenes
PDBj
CellType: RS4-11
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX151223
GSM941544: AF4 HiSeq ChIPSeq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
AFF1
Cell type
Cell type Class
Blood
Cell type
RS4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic
Attributes by original data submitter
Sample
source_name
Acute lymphoblastic leukemia cells with MLL/AF4 translocation, AF4 ChIP
cell type
RS4;11 ALL cells
chip antibody
AF4
chip antibody host
rabbit
antibody vendor
Abcam
Sequenced DNA Library
library_name
GSM941544: AF4_HiSeq_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
148004489
Reads aligned (%)
75.3
Duplicates removed (%)
15.4
Number of peaks
6834 (qval < 1E-05)
hg38
Number of total reads
148004489
Reads aligned (%)
77.2
Duplicates removed (%)
13.9
Number of peaks
7361 (qval < 1E-05)
Base call quality data from
DBCLS SRA