SRX151223
GSM941544: AF4 HiSeq ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AFF1

Cell type

Cell type Class
Blood
Cell type
RS4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Acute lymphoblastic leukemia cells with MLL/AF4 translocation, AF4 ChIP
cell type
RS4;11 ALL cells
chip antibody
AF4
chip antibody host
rabbit
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM941544: AF4_HiSeq_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
148004489
Reads aligned (%)
89.6
Duplicates removed (%)
13.9
Number of peaks
7361 (qval < 1E-05)

hg19

Number of total reads
148004489
Reads aligned (%)
89.0
Duplicates removed (%)
15.4
Number of peaks
6834 (qval < 1E-05)

Base call quality data from DBCLS SRA