SRX150789
GSM940401: ChIPSeq RXR; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rxra

Cell type

Cell type Class
Neural
Cell type
C17-2
NA
NA

Attributes by original data submitter

Sample

source_name
C17.2a neural progenitor cells, RXR ChIP
cell line
C17.2a
cell type
C17.2 neural progenitor cells stably expressing tagged thyroid hormone receptor alpha
treatment
none
chip antibody
pan-RXR
antibody vendor
Santa Cruz
antibody catalog number
sc-774x lot #F1609

Sequenced DNA Library

library_name
GSM940401: ChIPSeq_RXR
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
54062038
Reads aligned (%)
52.8
Duplicates removed (%)
9.9
Number of peaks
2326 (qval < 1E-05)

mm9

Number of total reads
54062038
Reads aligned (%)
52.7
Duplicates removed (%)
9.9
Number of peaks
1786 (qval < 1E-05)

Base call quality data from DBCLS SRA