SRX150787
GSM940399: ChAPSeq TRa; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Thra

Cell type

Cell type Class
Neural
Cell type
C17-2
NA
NA

Attributes by original data submitter

Sample

source_name
C17.2a neural progenitor cells, TRa ChAP
cell line
C17.2a
cell type
C17.2 neural progenitor cells stably expressing tagged thyroid hormone receptor alpha
treatment
none
chap tag
Protein G

Sequenced DNA Library

library_name
GSM940399: ChAPSeq_TRa
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31449672
Reads aligned (%)
84.8
Duplicates removed (%)
7.7
Number of peaks
1372 (qval < 1E-05)

mm9

Number of total reads
31449672
Reads aligned (%)
84.6
Duplicates removed (%)
7.7
Number of peaks
939 (qval < 1E-05)

Base call quality data from DBCLS SRA