Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF143

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
GM12878
cell organism
human
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
Znf143_(16618-1-AP)
antibody antibodydescription
Rabbit polyclonal against human ZNF143 (amino acids 283-626)-6his fusion protein. Antibody Target: Znf143
antibody targetdescription
Transcriptional activator. Activates the gene for selenocysteine tRNA (tRNAsec). Binds to the SPH motif of small nuclear RNA (snRNA) gene promoters. Participates to efficient U6 RNA polymerase III transcription via its interaction with CHD8
antibody vendorname
Proteintech
antibody vendorid
16618-1-AP
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000625
replicate
1

Sequenced DNA Library

library_name
GSM935613: Stanford_ChipSeq_GM12878_Znf143_(16618-1-AP)_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
55524155
Reads aligned (%)
76.5
Duplicates removed (%)
14.9
Number of peaks
47286 (qval < 1E-05)

hg38

Number of total reads
55524155
Reads aligned (%)
78.2
Duplicates removed (%)
13.9
Number of peaks
45812 (qval < 1E-05)

Base call quality data from DBCLS SRA