SRX150671
GSM935592: USC ChipSeq HEK293 KAP1 UCDavis

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TRIM28

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HEK293
cell organism
human
cell description
embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
treatment
None
treatment description
No special treatment or protocol applies
antibody
KAP1
antibody antibodydescription
rabbit polyclonal. Antibody Target: KAP1
antibody targetdescription
KRAB Associated Protein 1, helps regulate transcriptional repression
antibody vendorname
Abcam
antibody vendorid
ab10483
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001777
replicate
1

Sequenced DNA Library

library_name
GSM935592: USC_ChipSeq_HEK293_KAP1_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
160784432
Reads aligned (%)
62.2
Duplicates removed (%)
5.7
Number of peaks
54086 (qval < 1E-05)

hg19

Number of total reads
160784432
Reads aligned (%)
61.8
Duplicates removed (%)
6.9
Number of peaks
54605 (qval < 1E-05)

Base call quality data from DBCLS SRA