SRX150669
GSM935590: USC ChipSeq HEK293 ELK4 UCDavis

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ELK4

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HEK293
cell organism
human
cell description
embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
treatment
None
treatment description
No special treatment or protocol applies
antibody
ELK4
antibody antibodydescription
Rabbit polyclonal IgG. Antibody Target: ELK4
antibody targetdescription
This gene is a member of the Ets family of transcription factors and of the ternary complex factor (TCF) subfamily. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-13030
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001777
replicate
1

Sequenced DNA Library

library_name
GSM935590: USC_ChipSeq_HEK293_ELK4_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
83126353
Reads aligned (%)
84.0
Duplicates removed (%)
10.5
Number of peaks
1581 (qval < 1E-05)

hg19

Number of total reads
83126353
Reads aligned (%)
83.4
Duplicates removed (%)
12.2
Number of peaks
1658 (qval < 1E-05)

Base call quality data from DBCLS SRA