Antigen

Antigen Class

TFs and others

Antigen

BHLHE40

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

source_name

HepG2

biomaterial_provider

ATCC

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HepG2

cell organism

human

cell description

hepatocellular carcinoma

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

antibody

BHLHE40_(NB100-1800)

antibody antibodydescription

Rabbit polyclonal, maps to a region between residues 350 and the C-terminus (residue 412). Antibody Target: BHLHE40

antibody targetdescription

This gene encodes a basic helix-loop-helix protein expressed in various tissues. Expression in the chondrocytes is responsive to the addition of Bt2cAMP. The encoded protein is believed to be involved in the control of cell differentiation.

antibody vendorname

Novus

antibody vendorid

NB100-1800

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH001791

replicate

1

Sequenced DNA Library

library_name

GSM935566: Stanford_ChipSeq_HepG2_BHLHE40_(NB100-1800)_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg19

Number of total reads

55021265

Reads aligned (%)

91.7

Duplicates removed (%)

5.6

Number of peaks

21251 (qval < 1E-05)

hg38

Number of total reads

55021265

Reads aligned (%)

93.6

Duplicates removed (%)

4.4

Number of peaks

21494 (qval < 1E-05)