SRX150594
GSM935515: Stanford ChipSeq HepG2 Input IgG-goat

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HepG2
cell organism
human
cell description
hepatocellular carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
IgG-goat
control description
Input signal from Normal Goat IgG ChIP-seq.
control
IgG-goat
control description
Input signal from Normal Goat IgG ChIP-seq.
controlid
wgEncodeEH002803
replicate
1

Sequenced DNA Library

library_name
GSM935515: Stanford_ChipSeq_HepG2_Input_IgG-goat
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41101131
Reads aligned (%)
97.3
Duplicates removed (%)
2.5
Number of peaks
1122 (qval < 1E-05)

hg19

Number of total reads
41101131
Reads aligned (%)
96.5
Duplicates removed (%)
3.7
Number of peaks
1309 (qval < 1E-05)

Base call quality data from DBCLS SRA