Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MXI1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
Mxi1_(AF4185)
antibody antibodydescription
Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1
antibody targetdescription
Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX
antibody vendorname
R&D Systems
antibody vendorid
AF4185
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001795
replicate
1

Sequenced DNA Library

library_name
GSM935497: Stanford_ChipSeq_K562_Mxi1_(AF4185)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
55586400
Reads aligned (%)
77.9
Duplicates removed (%)
9.6
Number of peaks
7442 (qval < 1E-05)

hg38

Number of total reads
55586400
Reads aligned (%)
79.7
Duplicates removed (%)
8.3
Number of peaks
7574 (qval < 1E-05)

Base call quality data from DBCLS SRA