Antigen

Antigen Class

TFs and others

Antigen

WRNIP1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

WHIP

antibody antibodydescription

Rabbit polyclonal; Immunogen:Synthetic peptide: SRESYDAPPTPSGAC conjugated to KLH, corresponding to amino acids 107-120 of Human WHIP. Antibody Target: WHIP

antibody targetdescription

Interacts with the N-terminal portion of Werner protein containing the exonuclease domain, shows homology to replication factor C family proteins, and is conserved from E. coli to human. Studies in yeast suggest that this gene may influence the aging process. Functions as a modulator for initiation or reinitiation events during DNA polymerase delta-mediated DNA synthesis. Has an intrinsic ATPase activity that functions as a sensor of DNA damage or of arrested replication forks and regulates the extent of DNA synthesis.

antibody vendorname

Abcam

antibody vendorid

ab4731

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

controlid

wgEncodeEH000706

replicate

1

Sequenced DNA Library

library_name

GSM935492: Stanford_ChipSeq_GM12878_WHIP_IgG-mus

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

55570937

Reads aligned (%)

77.6

Duplicates removed (%)

3.9

Number of peaks

3828 (qval < 1E-05)

hg19

Number of total reads

55570937

Reads aligned (%)

76.8

Duplicates removed (%)

4.9

Number of peaks

3496 (qval < 1E-05)