Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Yale
lab description
Snyder - Yale University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
IFNa6h
treatment description
Interferon alpha treatment - 6 hours (Snyder)
antibody
STAT1
antibody antibodydescription
rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1
antibody targetdescription
transcription factor, activated by interferon signalling
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-345
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000656
replicate
1

Sequenced DNA Library

library_name
GSM935471: Yale_ChipSeq_K562_IFNa6h_STAT1_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
38874397
Reads aligned (%)
49.5
Duplicates removed (%)
3.9
Number of peaks
2029 (qval < 1E-05)

hg38

Number of total reads
38874397
Reads aligned (%)
50.5
Duplicates removed (%)
3.0
Number of peaks
1972 (qval < 1E-05)

Base call quality data from DBCLS SRA