Antigen

Antigen Class

TFs and others

Antigen

JUND

Cell type

Cell type Class

Pluripotent stem cell

Cell type

hESC H1

NA

NA

Sample

source_name

H1-hESC

biomaterial_provider

WiCell Research Institute

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

H1-hESC

cell organism

human

cell description

embryonic stem cells

cell karyotype

normal

cell lineage

inner cell mass

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

antibody

JunD

antibody antibodydescription

rabbit polyclonal IgG. Antibody Target: JunD

antibody targetdescription

The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-74

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH001834

replicate

1

Sequenced DNA Library

library_name

GSM935434: Stanford_ChipSeq_H1-hESC_JunD_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

61708942

Reads aligned (%)

96.1

Duplicates removed (%)

9.5

Number of peaks

21073 (qval < 1E-05)

hg19

Number of total reads

61708942

Reads aligned (%)

95.5

Duplicates removed (%)

10.6

Number of peaks

21179 (qval < 1E-05)