Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

Coriell

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

controlid

wgEncodeEH000706

labversion

Illumina 2.0, low confidence sequences excluded

replicate

1

Sequenced DNA Library

library_name

GSM935390: Stanford_ChipSeq_GM12878_Input_IgG-mus

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

11738079

Reads aligned (%)

91.3

Duplicates removed (%)

3.1

Number of peaks

308 (qval < 1E-05)

hg19

Number of total reads

11738079

Reads aligned (%)

90.5

Duplicates removed (%)

3.7

Number of peaks

478 (qval < 1E-05)