Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR2C2

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
TR4
antibody antibodydescription
Rabbit polyclonal. Antibody Target: TR4
antibody targetdescription
(Also: NR2C2) Members of the nuclear hormone receptor family, such as NR2C2, act as ligand-activated transcription factors. The proteins have an N-terminal transactivation domain, a central DNA-binding domain with 2 zinc fingers, and a ligand-binding domain at the C terminus.
antibody vendorname
Donated by Dr. J.D.Engel, University of Michigan
antibody vendorid
TR4
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000612
labversion
Fragmented using Bioruptor, precipitated with protein A agarose beads,
replicate
1
softwareversion
PeakSeq1.0 (fdr 0.001)

Sequenced DNA Library

library_name
GSM935369: USC_ChipSeq_HeLa-S3_TR4_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
48888402
Reads aligned (%)
58.9
Duplicates removed (%)
3.5
Number of peaks
3291 (qval < 1E-05)

hg38

Number of total reads
48888402
Reads aligned (%)
59.7
Duplicates removed (%)
2.8
Number of peaks
3205 (qval < 1E-05)

Base call quality data from DBCLS SRA