SRX150431
GSM935351: USC ChipSeq HeLa-S3 ELK4 UCDavis

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ELK4

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
ELK4
antibody antibodydescription
Rabbit polyclonal IgG. Antibody Target: ELK4
antibody targetdescription
This gene is a member of the Ets family of transcription factors and of the ternary complex factor (TCF) subfamily. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-13030
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001754
replicate
1

Sequenced DNA Library

library_name
GSM935351: USC_ChipSeq_HeLa-S3_ELK4_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46800177
Reads aligned (%)
63.3
Duplicates removed (%)
12.7
Number of peaks
4401 (qval < 1E-05)

hg19

Number of total reads
46800177
Reads aligned (%)
62.9
Duplicates removed (%)
13.5
Number of peaks
4408 (qval < 1E-05)

Base call quality data from DBCLS SRA