Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

PBDEFetal

Tissue

liver

Lineage

mesoderm

Description

peripheral blood-derived erythroblasts from 16-19 week human fetal liver

Sample

source_name

PBDEFetal

biomaterial_provider

Bouhassira Lab

lab

USC

lab description

Farnham - University of Southern California

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

PBDEFetal

cell organism

human

cell description

peripheral blood-derived erythroblasts from 16-19 week human fetal liver

cell karyotype

normal

cell lineage

mesoderm

cell sex

U

treatment

None

treatment description

No special treatment or protocol applies

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

control

UCDavis

control description

Input library was prepared at UC Davis.

control

UCDavis

control description

Input library was prepared at UC Davis.

controlid

wgEncodeEH001786

Sequenced DNA Library

library_name

GSM935334: USC_ChipSeq_PBDEFetal_Input_UCDavis

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

25531894

Reads aligned (%)

97.8

Duplicates removed (%)

7.3

Number of peaks

850 (qval < 1E-05)

hg19

Number of total reads

25531894

Reads aligned (%)

96.8

Duplicates removed (%)

8.8

Number of peaks

1024 (qval < 1E-05)