Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Neural

Cell type

Brain

MeSH Description

The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Sample

source_name

ChIP_MNase_monon_WB_INPUT

strain

129/C57BL6

genotype/variation

wild type

gender

male

tissue

Wholebrain

chip/rip antibody

MECP2

chip/rip antibody vendor

Sigma

Sequenced DNA Library

library_name

GSM939575: ChIP of MNase mononucleosome selected whole brain material INPUT

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

mm10

Number of total reads

13616269

Reads aligned (%)

97.7

Duplicates removed (%)

3.2

Number of peaks

126 (qval < 1E-05)

mm9

Number of total reads

13616269

Reads aligned (%)

97.6

Duplicates removed (%)

3.3

Number of peaks

179 (qval < 1E-05)