Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNAPC5

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90hTert_SNAP19
cell line
IMR90hTert
cell type
diploid fibroblast-like cells
tissue origin
fetal female lung
transfected with
human Telomerase reverse Transcriptase gene
chip antibody
polyclonal rabbit antibody CS539 #7,8
chip antibody reference
Rabbit anti-peptide antibody raised against SNAPC5 peptide mlsrlqelrkeeet, Faresse, N., et al., PLoS Genetics, submitted.

Sequenced DNA Library

library_name
GSM938414: SNAP19_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
33163321
Reads aligned (%)
77.5
Duplicates removed (%)
18.9
Number of peaks
1242 (qval < 1E-05)

hg38

Number of total reads
33163321
Reads aligned (%)
79.4
Duplicates removed (%)
17.4
Number of peaks
1297 (qval < 1E-05)

Base call quality data from DBCLS SRA