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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Orc2
wikigenes
PDBj
CellType: 0-2h embryos
ATCC
MeSH
RIKEN BRC
SRX150050
GSM938101: 0-2hr Embryo ORC Chip-Seq extraction2 seq1 aliquote 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Orc2
Cell type
Cell type Class
Embryo
Cell type
0-2h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
0-2hr Embryo ORC Chip-Seq
developmental stage
Embryo 0-2h
Sequenced DNA Library
library_name
GSM938101: 0-2hr Embryo ORC Chip-Seq extraction2_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
4609838
Reads aligned (%)
94.5
Duplicates removed (%)
25.8
Number of peaks
1247 (qval < 1E-05)
dm3
Number of total reads
4609838
Reads aligned (%)
95.0
Duplicates removed (%)
22.5
Number of peaks
1146 (qval < 1E-05)
Base call quality data from
DBCLS SRA