SRX149728
GSM937966: hsH2A.Bbd; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa
cell line
HeLa
shearing protocol
Mnase
affinity tag
FLAG

Sequenced DNA Library

library_name
GSM937966: hsH2A.Bbd
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39199700
Reads aligned (%)
96.9
Duplicates removed (%)
11.2
Number of peaks
1522 (qval < 1E-05)

hg19

Number of total reads
39199700
Reads aligned (%)
95.9
Duplicates removed (%)
11.6
Number of peaks
1480 (qval < 1E-05)

Base call quality data from DBCLS SRA