SRX149705
GSM937862: 293Trex N3-SCML2A.input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
293T-Rex
cell line
293T-Rex
transgene
N3-SCML2A
epitope tag
Flag-HA-OneSTrEP (N-terminal)
antibody
none

Sequenced DNA Library

library_name
GSM937862: 293Trex_N3-SCML2A.input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34909005
Reads aligned (%)
95.1
Duplicates removed (%)
9.8
Number of peaks
678 (qval < 1E-05)

hg19

Number of total reads
34909005
Reads aligned (%)
94.6
Duplicates removed (%)
10.8
Number of peaks
872 (qval < 1E-05)

Base call quality data from DBCLS SRA