SRX149697
GSM937828: RNAPII-SER2P; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
neural stem cells
tissue
cerebral cortex
development stage
e12.5
genotype/variation
wild type
antibody
polyclonal rabbit RNAPII Phospho S2 ChIP grade
vendor/catalog
Abcam, ab5095

Sequenced DNA Library

library_name
GSM937828: RNAPII-SER2P
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26440517
Reads aligned (%)
78.0
Duplicates removed (%)
9.6
Number of peaks
9435 (qval < 1E-05)

mm9

Number of total reads
26440517
Reads aligned (%)
77.8
Duplicates removed (%)
9.8
Number of peaks
9422 (qval < 1E-05)

Base call quality data from DBCLS SRA