SRX149640
GSM937542: ChIP-Seq for SA2 in mES cells (rep 2); Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Stag2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
chip antibody
SA2
antibody catalog number
Bethyl A300-158A-1
cell type
V6.5 embryonic stem cells

Sequenced DNA Library

library_name
GSM937542: ChIP-Seq for SA2 in mES cells (rep 2)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24525497
Reads aligned (%)
90.7
Duplicates removed (%)
17.4
Number of peaks
40980 (qval < 1E-05)

mm9

Number of total reads
24525497
Reads aligned (%)
90.5
Duplicates removed (%)
17.5
Number of peaks
40972 (qval < 1E-05)

Base call quality data from DBCLS SRA