Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.

Attributes by original data submitter

Sample

source_name
Heart
strain
C57BL/6
tissue
heart 4 days post-injury (MI)
age
Adult (10-12 weeks postnatally)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Brg1-DNA complexes were isolated with antibody. DNA libraries were prepared with the NEBNext® Ultra DNA Library Prep Kit for Illumina according to the manufacturer’s protocol. Libraries were quantified with Qubit dsDNA HS Assay Kit (Invitrogen) and KAPA Library Quantification Kit for Illumina, and then sequenced on an Illumina NextSeq 500 instrument.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
96698581
Reads aligned (%)
93.2
Duplicates removed (%)
18.4
Number of peaks
508 (qval < 1E-05)

mm9

Number of total reads
96698581
Reads aligned (%)
93.0
Duplicates removed (%)
19.5
Number of peaks
547 (qval < 1E-05)

Base call quality data from DBCLS SRA