Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF
cell type
mouse embryonic fibroblast (MEF)
genotype/variation
overexpressing HA-tagged Fbxl10
induced with
1 µg/ml doxycycline for 48hrs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed with SimpleChIP Enzymatic Chromatin IP Kit according to the manufacturer's protocol and 7 μg of chromatin was immunoprecipitated with 5 μg of HA antibody. We isolated MEFs from our gain of function model and three independent ChIp-Seq samples were generated from non-induced and induced MEFs. Chromatin was immunoprecipitated with an HA antibody and ChIP-Seq libraries were sequenced using a HiSeq 2000 (Illumina).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
22626249
Reads aligned (%)
98.3
Duplicates removed (%)
10.8
Number of peaks
119 (qval < 1E-05)

mm9

Number of total reads
22626249
Reads aligned (%)
98.2
Duplicates removed (%)
11.0
Number of peaks
81 (qval < 1E-05)

Base call quality data from DBCLS SRA