SRX149204
GSM936202: epitope-tagged HA-Ikaros, rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ikzf1

Cell type

Cell type Class
Blood
Cell type
B3
NA
NA

Attributes by original data submitter

Sample

source_name
ChIP-Seq data from HA-Ikaros transduced B3 cells using Anti-haemagglutinin (HA)
cell line
pre-B cell line B3
cell line reference
Brown et al. 1997
chip antibody
Anti-haemagglutinin (HA) (Covance).

Sequenced DNA Library

library_name
GSM936202: epitope-tagged HA-Ikaros, rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28739430
Reads aligned (%)
93.5
Duplicates removed (%)
19.1
Number of peaks
11215 (qval < 1E-05)

mm9

Number of total reads
28739430
Reads aligned (%)
93.1
Duplicates removed (%)
19.0
Number of peaks
11234 (qval < 1E-05)

Base call quality data from DBCLS SRA